Custom code for: "Sequence determinants of human gene regulatory elements"

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dc.contributor.affiliationApplied Tumor Genomics Research Program, Faculty of Medicine, University of Helsinki, Helsinki, Finland. Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden. Department of Biochemistry, University of Cambridge, Cambridge, United Kingdom-Taipale, Jussi
dc.contributor.authorTaipale, Jussi
dc.date.accessioned2025-04-29T14:04:22Z
dc.date.issued2021-08-04
dc.date.issued2021-08-04
dc.descriptionThis record contains the essential custom code from manuscript: Sahu, Biswajyoti, et al. "Sequence determinants of human gene regulatory elements." (2021). The README-files provided with the record describe the code in more detail. The original raw data is deposited to GEO (GEO accession: GSE180158). The final machine learning models used in the manuscript along with their respective training, test and validation data have been deposited to Zenodo (10.5281/zenodo.5101420).
dc.identifierhttps://doi.org/10.5281/zenodo.5159644
dc.identifier.urihttps://datakatalogi.helsinki.fi/handle/123456789/5829
dc.rights.licenseother-open
dc.subjectGene regulation
dc.subjectSTARR-seq
dc.subjectDeep learning
dc.subjectConvolutional neural networks
dc.subjectMachine learning
dc.titleCustom code for: "Sequence determinants of human gene regulatory elements"
dc.typesoftware

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